Synthetic Biology, Part B

<p>Voigt / MIE Vol</p> <p>Table of Contents</p> <p>Synthetic biology, Part B</p> <p>Subtitle: Computer Aided Design and DNA Assembly</p> <p>Section I. Mathematical and Computational Methods </p> <ol> <p> <li>DNA-binding specificity prediction with FoldX</li> <p>Alejandro D. Nadra, Luis Serrano, Andreu Alibés</p> <p> <li>The Ribosome Binding Site Calculator</li> <p>Howard M. Salis</p> <p> <li>Designing Genes for Successful Protein Expression</li> <p>Mark Welch, Alan Villalobos, Claes Gustafsson and Jeremy Minshull</p> <p> <li>Application of Metabolic Flux Analysis in Metabolic Engineering</li> <p>Sang Yup Lee, Jong Myoung Park and Tae Yong Kim</p> <p>Section II. Grammars, Languages, and Computer-Aided Design</p> <p> <li>Clotho: A Software Platform for the Creation of Synthetic Biological Systems</li> <p>Swapnil Bhatia, Bing Xia, Ben Bubenheim,Maisam Dadgar, Douglas Densmoreand J. Christopher Anderson</p> <p> <li>SynBioSS-Aided Design of Synthetic Biological Constructs</li> <p>Yiannis N. Kaznessis</p> <p> <li>The Eugene Language for Synthetic Biology</li> <p>Lesia Bilitchenko, Adam Liu, Douglas Densmore</p> <p> <li>A step by step introduction to rule-based design of synthetic genetic constructs using GenoCAD</li> <p>Mandy L. Wilson, Russell Hertzberg, Laura Adam, Jean Peccoud</p> <p> <li>Methods for open innovation on a genome-design platform associating scientific, commercial, and educational communities in synthetic biology</li> <p>Tetsuro Toyoda</p> <p>Section III. Next-Generation DNA Assembly and Manipulation</p> <p> <li>Recursive construction and error correction of DNA molecules and libraries from synthetic and natural DNA</li> <p>Tuval Ben Yehezkel and Ehud Shapiro</p> <p> <li>Industrial scale gene synthesis</li> <p>Frank Notka, Michael Liss & Ralf Wagner</p> <p> <li>Chemical DNA Synthesis: Methods and Applications</li> <p>Randall A. Hughes, Aleksandr E. Miklos, and Andrew D. Ellington</p> <p> <li>Assembly of BioBrick standard biological parts using three antibiotic assembly</li> <p>Reshma Shetty, Meagan Lizarazo, Randy Rettberg, and Thomas F. Knight, Jr</p> <p> <li>Genetic Assembly Tools for Synthetic Biology</li> <p>Billyana Tsvetanova, Lansha Peng, Xiquan Liang, Ke Li, Jian-Ping Yang, Tony Ho, Josh Shirley, Liewei Xu, Jason Potter, Wieslaw Kudlicki, Todd Peterson, and Federico Katzen</p> <p> <li>Enzymatic assembly of overlapping DNA fragments</li> <p>Daniel G. Gibson</p> <p> <li>Automated assembly of standard biological parts</li> <p>Mariana Leguia, Jennifer Brophy, Douglas Densmore and J. Christopher Anderson</p> <p> <li>MEGAWHOP Cloning: A method of creating random mutagenesis libraries via megaprimer PCR of whole plasmids</li> <p>Kentaro Miyazaki</p> <p>Section III. Genome-scale Engineering</p> <p> <li>Rapid and Multiplexed Genome Engineering and Genotyping Methods: Applications for Synthetic Biology and Protein and Pathway Engineering</li> <p>Harris H. Wang and George M. Church</p> <p> <li>Construction and manipulation of giant DNA by a genome vector</li> <p>Mitsuhiro ITAYA and Kenji TSUGE</p> <p> <li>Mapping E. coli RNA Polymerase and associated transcription factors and identifying promoters genome-wide</li> </ol> <p>Sarah E. Davis, Rachel A. Mooney, Elenita I. Kanin, Jeff Grass, Robert Landick and Aseem Z. Ansari</p>